1 HisKA_3#1
176-239 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:176:3.81e-23:239:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS02225
Histidine kinase, Classic
Bacillus wiedmannii · GCF_025518765
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS02225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 374 aa (40.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
280-365 aa · 86 aa · 23.0% of protein
Raw token
HATPase_c:280:0.0000000000284:365:104:109- Raw architecture: HisKA_3:176:3.81e-23:239:64:68#HATPase_c:280:0.0000000000284:365:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span424272-425995Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_02230RefSeq proteinWP_064476088.1
Context group ID
GCF_025518765::NZ_JAOPTH010000001.1::G00014Context members
OCF58_RS02220OCF58_RS02225
Partner locus tags
OCF58_RS02220OCF58_RS02225
Partner old locus tags
OCF58_02225OCF58_02230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064476088.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PPF7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PPF7_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS02225Primary locus identifier stored in the genes table.
Old locus tagOCF58_02230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000001.1Sequence record reported by the local genomic context database.
Genomic interval424 871-425 995 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span424 272-425 995 ntGCF_025518765::NZ_JAOPTH010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span424 272-425 995 nt1 724 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
424 272 nt425 995 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS02220GCF_025518765#OCF58_RS02220
RRNarL
424 272-424 874 nt · Reverse (-)
OCF58_RS02225GCF_025518765#OCF58_RS02225
HKClassicCurrent focus
424 871-425 995 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS17605Use this link to inspect the representative gene detail.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2658194
Simplified PFAM architecture for HKOC_2658194
PFAM domain coverage: 256 / 374 aa (68.4%)
1 aa374 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-144] | HisKA_3[176-239] | HATPase_c[278-328]
- Domain count: 3
- Matched identifier: HKOC_2658194
- Positioned domains: DesK_N 4-144 ; HisKA_3 176-239 ; HATPase_c 278-328
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS17605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key