1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:2.34e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF58_RS00690
Response regulator OmpR family
Bacillus wiedmannii · GCF_025518765
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025518765#OCF58_RS00690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 221 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.6% of protein
Raw token
Trans_reg_C:148:5.48e-31:219:77:77- Raw architecture: Response_reg:4:2.34e-30:113:111:111#Trans_reg_C:148:5.48e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025518765::NZ_JAOPTH010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111233-113318Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF58_00690RefSeq proteinWP_000148838.1
Context group ID
GCF_025518765::NZ_JAOPTH010000001.1::G00010Context members
OCF58_RS00690OCF58_RS00695
Partner locus tags
OCF58_RS00690OCF58_RS00695
Partner old locus tags
OCF58_00690OCF58_00695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000148838.1Primary protein accession used for annex mappings.
UniProt accessionA0A0J7CXP4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0J7CXP4_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF58_RS00690Primary locus identifier stored in the genes table.
Old locus tagOCF58_00690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTH010000001.1Sequence record reported by the local genomic context database.
Genomic interval111 233-111 898 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 233-113 318 ntGCF_025518765::NZ_JAOPTH010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025518765::NZ_JAOPTH010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span111 233-113 318 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 233 nt113 318 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF58_RS00690GCF_025518765#OCF58_RS00690
RROmpRCurrent focus
111 233-111 898 nt · Forward (+)
OCF58_RS00695GCF_025518765#OCF58_RS00695
HKClassic
111 876-113 318 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293565#IEO_RS23135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1678687
Simplified PFAM architecture for RROC_1678687
PFAM domain coverage: 180 / 221 aa (81.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-218]
- Domain count: 2
- Matched identifier: RROC_1678687
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-218 ; Trans_reg_C 148-218
Cluster members and taxonomy
Representative gene: GCF_000293565#IEO_RS23135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_025518765
AssemblyASM2551876v1 · Scaffoldhaploid
Genome composition5 748 450 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 65 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key