1 Response_reg#1
20-134 aa · 115 aa · 51.1% of protein
Raw token
Response_reg:20:1.05e-18:134:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMJ98_RS06215
Response regulator NarL family
Bifidobacterium adolescentis · GCF_025289145
ClassRRTypeNarLLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025289145#JMJ98_RS06215Stable P2CS identifier used across views.
GenomeGCF_025289145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 225 aa (76.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
163-218 aa · 56 aa · 24.9% of protein
Raw token
HTH_LUXR:163:8.37e-18:218:56:58- Raw architecture: Response_reg:20:1.05e-18:134:116:111#HTH_LUXR:163:8.37e-18:218:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025289145::NZ_JAESIS010000003.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87674-88351Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMJ98_06145RefSeq proteinWP_231837093.1
Context group ID
GCF_025289145::NZ_JAESIS010000003.1::G00012Context members
JMJ98_RS06215
Partner locus tags
JMJ98_RS06215
Partner old locus tags
JMJ98_06145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231837093.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMJ98_RS06215Primary locus identifier stored in the genes table.
Old locus tagJMJ98_06145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAESIS010000003.1Sequence record reported by the local genomic context database.
Genomic interval87 674-88 351 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 674-88 351 ntGCF_025289145::NZ_JAESIS010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025289145::NZ_JAESIS010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAESIS010000003.1All displayed genes belong to this local TCS context.
Neighborhood span87 674-88 351 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 674 nt88 351 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JMJ98_RS06215GCF_025289145#JMJ98_RS06215
RRNarLCurrent focus
87 674-88 351 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS00245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462639
Simplified PFAM architecture for RROC_1462639
PFAM domain coverage: 167 / 225 aa (74.2%)
1 aa225 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[20-133] | GerE[165-217]
- Domain count: 2
- Matched identifier: RROC_1462639
- Positioned domains: Response_reg 20-133 ; Response_reg 20-133 ; GerE 165-217 ; GerE 165-217
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS00245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_025289145
AssemblyASM2528914v1 · Scaffoldhaploid
Genome composition2 064 046 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key