1 HisKA_3#1
188-252 aa · 65 aa · 16.1% of protein
Raw token
HisKA_3:188:0.00000000000000179:252:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMJ98_RS04815
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_025289145
ClassHKTypeClassicLength404 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025289145#JMJ98_RS04815Stable P2CS identifier used across views.
GenomeGCF_025289145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 404 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa404 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-390 aa · 94 aa · 23.3% of protein
Raw token
HATPase_c:297:0.000000179:390:102:109- Raw architecture: HisKA_3:188:0.00000000000000179:252:65:68#HATPase_c:297:0.000000179:390:102:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025289145::NZ_JAESIS010000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span194588-196506Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMJ98_04765RefSeq proteinWP_011743397.1
Context group ID
GCF_025289145::NZ_JAESIS010000002.1::G00011Context members
JMJ98_RS04810JMJ98_RS04815
Partner locus tags
JMJ98_RS04810JMJ98_RS04815
Partner old locus tags
JMJ98_04760JMJ98_04765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743397.1Primary protein accession used for annex mappings.
UniProt accessionA1A289Primary UniProt accession resolved in the annex database.
UniProt IDA1A289_BIFAADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMJ98_RS04815Primary locus identifier stored in the genes table.
Old locus tagJMJ98_04765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAESIS010000002.1Sequence record reported by the local genomic context database.
Genomic interval195 292-196 506 nt1 215 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span194 588-196 506 ntGCF_025289145::NZ_JAESIS010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025289145::NZ_JAESIS010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAESIS010000002.1All displayed genes belong to this local TCS context.
Neighborhood span194 588-196 506 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 588 nt196 506 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMJ98_RS04810GCF_025289145#JMJ98_RS04810
RRNarL
194 588-195 292 nt · Reverse (-)
JMJ98_RS04815GCF_025289145#JMJ98_RS04815
HKClassicCurrent focus
195 292-196 506 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS05535Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2406881
Simplified PFAM architecture for HKOC_2406881
PFAM domain coverage: 66 / 404 aa (16.3%)
1 aa404 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[188-253]
- Domain count: 1
- Matched identifier: HKOC_2406881
- Positioned domains: HisKA_3 188-253
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS05535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_025289145
AssemblyASM2528914v1 · Scaffoldhaploid
Genome composition2 064 046 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key