1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:4.25e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF104450_RS07885
Response regulator OmpR family
Clostridioides difficile · GCF_025135955
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025135955#CDIF104450_RS07885Stable P2CS identifier used across views.
GenomeGCF_025135955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.21e-30:232:78:77- Raw architecture: Response_reg:12:4.25e-29:120:110:111#Trans_reg_C:155:2.21e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025135955::NZ_CP021445.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1600662-1602618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF104450_01572RefSeq proteinWP_003438649.1
Context group ID
GCF_025135955::NZ_CP021445.1::G00020Context members
CDIF104450_RS07885CDIF104450_RS07890
Partner locus tags
CDIF104450_RS07885CDIF104450_RS07890
Partner old locus tags
CDIF104450_01572CDIF104450_01573
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003438649.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN6A4Z5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN6A4Z5_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF104450_RS07885Primary locus identifier stored in the genes table.
Old locus tagCDIF104450_01572Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021445.1Sequence record reported by the local genomic context database.
Genomic interval1 600 662-1 601 387 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 600 662-1 602 618 ntGCF_025135955::NZ_CP021445.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025135955::NZ_CP021445.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021445.1All displayed genes belong to this local TCS context.
Neighborhood span1 600 662-1 602 618 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 600 662 nt1 602 618 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF104450_RS07885GCF_025135955#CDIF104450_RS07885
RROmpRCurrent focus
1 600 662-1 601 387 nt · Forward (+)
CDIF104450_RS07890GCF_025135955#CDIF104450_RS07890
HKClassic
1 601 365-1 602 618 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0209045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862776
Simplified PFAM architecture for RROC_0862776
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862776
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0209045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025135955
AssemblyASM2513595v1 · Complete Genomehaploid
Genome composition4 270 750 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key