1 Response_reg#1
9-127 aa · 119 aa · 44.4% of protein
Raw token
Response_reg:9:1.58e-29:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HPH06_RS04255
Response regulator NarL family
Bifidobacterium breve · GCF_024760465
ClassRRTypeNarLLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024760465#HPH06_RS04255Stable P2CS identifier used across views.
GenomeGCF_024760465Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 268 aa (66.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
205-262 aa · 58 aa · 21.6% of protein
Raw token
HTH_LUXR:205:2.24e-24:262:58:58- Raw architecture: Response_reg:9:1.58e-29:127:119:111#HTH_LUXR:205:2.24e-24:262:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024760465::NZ_CP053655.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1000742-1004071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHPH06_04200RefSeq proteinWP_258900903.1
Context group ID
GCF_024760465::NZ_CP053655.1::G00005Context members
HPH06_RS04255HPH06_RS04260
Partner locus tags
HPH06_RS04255HPH06_RS04260
Partner old locus tags
HPH06_04200HPH06_04205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_258900903.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHPH06_RS04255Primary locus identifier stored in the genes table.
Old locus tagHPH06_04200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP053655.1Sequence record reported by the local genomic context database.
Genomic interval1 000 742-1 001 548 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 000 742-1 004 071 ntGCF_024760465::NZ_CP053655.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024760465::NZ_CP053655.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP053655.1All displayed genes belong to this local TCS context.
Neighborhood span1 000 742-1 004 071 nt3 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 000 742 nt1 004 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HPH06_RS04255GCF_024760465#HPH06_RS04255
RRNarLCurrent focus
1 000 742-1 001 548 nt · Reverse (-)
HPH06_RS04260GCF_024760465#HPH06_RS04260
HKClassic
1 001 570-1 004 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024760465#HPH06_RS04255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0621346
Simplified PFAM architecture for RROC_0621346
PFAM domain coverage: 174 / 268 aa (64.9%)
1 aa268 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[207-262]
- Domain count: 2
- Matched identifier: RROC_0621346
- Positioned domains: Response_reg 9-126 ; GerE 207-262
Cluster members and taxonomy
Representative gene: GCF_024760465#HPH06_RS04255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_024760465
AssemblyASM2476046v1 · Complete Genomehaploid
Genome composition2 371 121 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 28 · HK 10 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key