1 Response_reg#1
11-125 aa · 115 aa · 48.9% of protein
Raw token
Response_reg:11:1.47e-25:125:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NUU11_RS02925
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_024665655
ClassRRTypeNarLLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024665655#NUU11_RS02925Stable P2CS identifier used across views.
GenomeGCF_024665655Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 235 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-219 aa · 56 aa · 23.8% of protein
Raw token
HTH_LUXR:164:7.73e-16:219:56:58- Raw architecture: Response_reg:11:1.47e-25:125:115:111#HTH_LUXR:164:7.73e-16:219:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024665655::NZ_CP102541.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span613263-613970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNUU11_02925RefSeq proteinWP_212104571.1
Context group ID
GCF_024665655::NZ_CP102541.1::G00007Context members
NUU11_RS02925
Partner locus tags
NUU11_RS02925
Partner old locus tags
NUU11_02925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_212104571.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNUU11_RS02925Primary locus identifier stored in the genes table.
Old locus tagNUU11_02925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP102541.1Sequence record reported by the local genomic context database.
Genomic interval613 263-613 970 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span613 263-613 970 ntGCF_024665655::NZ_CP102541.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024665655::NZ_CP102541.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP102541.1All displayed genes belong to this local TCS context.
Neighborhood span613 263-613 970 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
613 263 nt613 970 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NUU11_RS02925GCF_024665655#NUU11_RS02925
RRNarLCurrent focus
613 263-613 970 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018140675#KDJ92_RS01535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1030843
Simplified PFAM architecture for RROC_1030843
PFAM domain coverage: 169 / 235 aa (71.9%)
1 aa235 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-125] | GerE[166-219]
- Domain count: 2
- Matched identifier: RROC_1030843
- Positioned domains: Response_reg 11-125 ; GerE 166-219
Cluster members and taxonomy
Representative gene: GCF_018140675#KDJ92_RS01535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_024665655
AssemblyASM2466565v1 · Complete Genomehaploid
Genome composition2 757 833 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key