1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.0000000000000763:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NQ183_RS04220
Histidine kinase, Classic
Clostridioides difficile · GCF_024628765
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_024628765#NQ183_RS04220Stable P2CS identifier used across views.
GenomeGCF_024628765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:4.4e-25:368:110:109- Raw architecture: HisKA:148:0.0000000000000763:211:64:64#HATPase_c:260:4.4e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_024628765::NZ_CP102400.1::G00005
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span806318-812042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNQ183_04220RefSeq proteinWP_262053344.1
Context group ID
GCF_024628765::NZ_CP102400.1::G00005Context members
NQ183_RS04200NQ183_RS04205NQ183_RS04210NQ183_RS04215NQ183_RS04220
Partner locus tags
NQ183_RS04200NQ183_RS04205NQ183_RS04210NQ183_RS04215NQ183_RS04220
Partner old locus tags
NQ183_04200NQ183_04205NQ183_04210NQ183_04215NQ183_04220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262053344.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNQ183_RS04220Primary locus identifier stored in the genes table.
Old locus tagNQ183_04220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP102400.1Sequence record reported by the local genomic context database.
Genomic interval810 927-812 042 nt1 116 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span806 318-812 042 ntGCF_024628765::NZ_CP102400.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024628765::NZ_CP102400.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP102400.1All displayed genes belong to this local TCS context.
Neighborhood span806 318-812 042 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
806 318 nt812 042 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
NQ183_RS04200GCF_024628765#NQ183_RS04200
RROmpR
806 318-806 995 nt · Forward (+)
NQ183_RS04205GCF_024628765#NQ183_RS04205
HKClassic
807 067-809 082 nt · Forward (+)
NQ183_RS04210GCF_024628765#NQ183_RS04210
RROmpR
809 132-809 812 nt · Forward (+)
NQ183_RS04215GCF_024628765#NQ183_RS04215
RROmpR
810 193-810 891 nt · Forward (+)
NQ183_RS04220GCF_024628765#NQ183_RS04220
HKClassicCurrent focus
810 927-812 042 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024628765#NQ183_RS04220The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2679357
Simplified PFAM architecture for HKOC_2679357
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2679357
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_024628765#NQ183_RS04220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024628765
AssemblyASM2462876v1 · Chromosomehaploid
Genome composition4 476 372 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key