1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:8.79e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX88_RS10285
Response regulator OmpR family
Bacillus mycoides · GCF_024498095
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498095#NPX88_RS10285Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:4.63e-34:230:78:77- Raw architecture: Response_reg:6:8.79e-35:114:110:111#Trans_reg_C:153:4.63e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498095::NZ_JANHMU010000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span211643-214096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX88_10285RefSeq proteinWP_098635485.1
Context group ID
GCF_024498095::NZ_JANHMU010000005.1::G00024Context members
NPX88_RS10285NPX88_RS10290
Partner locus tags
NPX88_RS10285NPX88_RS10290
Partner old locus tags
NPX88_10285NPX88_10290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098635485.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX88_RS10285Primary locus identifier stored in the genes table.
Old locus tagNPX88_10285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMU010000005.1Sequence record reported by the local genomic context database.
Genomic interval211 643-212 344 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span211 643-214 096 ntGCF_024498095::NZ_JANHMU010000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498095::NZ_JANHMU010000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMU010000005.1All displayed genes belong to this local TCS context.
Neighborhood span211 643-214 096 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
211 643 nt214 096 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX88_RS10285GCF_024498095#NPX88_RS10285
RROmpRCurrent focus
211 643-212 344 nt · Forward (+)
NPX88_RS10290GCF_024498095#NPX88_RS10290
HKClassic
212 354-214 096 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002569385#COL41_RS09285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1088464
Simplified PFAM architecture for RROC_1088464
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1088464
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_002569385#COL41_RS09285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498095
AssemblyASM2449809v1 · Contighaploid
Genome composition5 677 125 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 66 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key