1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.000000000000902:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX88_RS04120
Histidine kinase, Classic
Bacillus mycoides · GCF_024498095
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498095#NPX88_RS04120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 476 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-304 aa · 58 aa · 12.2% of protein
Raw token
HisKA:247:0.00000000000421:304:58:643 HATPase_c#3
356-464 aa · 109 aa · 22.9% of protein
Raw token
HATPase_c:356:1.25e-21:464:109:109- Raw architecture: HAMP:167:0.000000000000902:235:69:69#HisKA:247:0.00000000000421:304:58:64#HATPase_c:356:1.25e-21:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498095::NZ_JANHMU010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154181-156294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX88_04120RefSeq proteinWP_002034822.1
Context group ID
GCF_024498095::NZ_JANHMU010000002.1::G00006Context members
NPX88_RS04115NPX88_RS04120
Partner locus tags
NPX88_RS04115NPX88_RS04120
Partner old locus tags
NPX88_04115NPX88_04120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002034822.1Primary protein accession used for annex mappings.
UniProt accessionR8HJF8Primary UniProt accession resolved in the annex database.
UniProt IDR8HJF8_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX88_RS04120Primary locus identifier stored in the genes table.
Old locus tagNPX88_04120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMU010000002.1Sequence record reported by the local genomic context database.
Genomic interval154 864-156 294 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 181-156 294 ntGCF_024498095::NZ_JANHMU010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498095::NZ_JANHMU010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span154 181-156 294 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 181 nt156 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX88_RS04115GCF_024498095#NPX88_RS04115
RROmpR
154 181-154 852 nt · Forward (+)
NPX88_RS04120GCF_024498095#NPX88_RS04120
HKClassicCurrent focus
154 864-156 294 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS25345Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1654810
Simplified PFAM architecture for HKOC_1654810
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[248-308] | HATPase_c[358-462]
- Domain count: 3
- Matched identifier: HKOC_1654810
- Positioned domains: HAMP 184-235 ; HisKA 248-308 ; HATPase_c 358-462
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS25345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498095
AssemblyASM2449809v1 · Contighaploid
Genome composition5 677 125 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 66 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key