1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:1.04e-40:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX88_RS04115
Response regulator OmpR family
Bacillus mycoides · GCF_024498095
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498095#NPX88_RS04115Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:2.43e-28:221:77:77- Raw architecture: Response_reg:3:1.04e-40:112:111:111#Trans_reg_C:148:2.43e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498095::NZ_JANHMU010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154181-156294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX88_04115RefSeq proteinWP_060749215.1
Context group ID
GCF_024498095::NZ_JANHMU010000002.1::G00006Context members
NPX88_RS04115NPX88_RS04120
Partner locus tags
NPX88_RS04115NPX88_RS04120
Partner old locus tags
NPX88_04115NPX88_04120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060749215.1Primary protein accession used for annex mappings.
UniProt accessionA0A109GIC0Primary UniProt accession resolved in the annex database.
UniProt IDA0A109GIC0_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX88_RS04115Primary locus identifier stored in the genes table.
Old locus tagNPX88_04115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMU010000002.1Sequence record reported by the local genomic context database.
Genomic interval154 181-154 852 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 181-156 294 ntGCF_024498095::NZ_JANHMU010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498095::NZ_JANHMU010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span154 181-156 294 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 181 nt156 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX88_RS04115GCF_024498095#NPX88_RS04115
RROmpRCurrent focus
154 181-154 852 nt · Forward (+)
NPX88_RS04120GCF_024498095#NPX88_RS04120
HKClassic
154 864-156 294 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS02765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1594084
Simplified PFAM architecture for RROC_1594084
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1594084
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS02765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498095
AssemblyASM2449809v1 · Contighaploid
Genome composition5 677 125 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 66 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key