1 HAMP#1
318-385 aa · 68 aa · 10.9% of protein
Raw token
HAMP:318:0.0000000000000644:385:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX89_RS13055
Histidine kinase, Classic
Bacillus mycoides · GCF_024498055
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498055#NPX89_RS13055Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 624 aa (39.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation3 items
2 HisKA#2
405-469 aa · 65 aa · 10.4% of protein
Raw token
HisKA:405:0.00000000000000292:469:65:643 HATPase_c#3
513-623 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:513:1.13e-22:623:112:109- Raw architecture: HAMP:318:0.0000000000000644:385:68:69#HisKA:405:0.00000000000000292:469:65:64#HATPase_c:513:1.13e-22:623:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498055::NZ_JANHMV010000013.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5000-7560Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX89_13055RefSeq proteinWP_033709535.1
Context group ID
GCF_024498055::NZ_JANHMV010000013.1::G00029Context members
NPX89_RS13050NPX89_RS13055
Partner locus tags
NPX89_RS13050NPX89_RS13055
Partner old locus tags
NPX89_13050NPX89_13055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033709535.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX89_RS13055Primary locus identifier stored in the genes table.
Old locus tagNPX89_13055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMV010000013.1Sequence record reported by the local genomic context database.
Genomic interval5 686-7 560 nt1 875 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 000-7 560 ntGCF_024498055::NZ_JANHMV010000013.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498055::NZ_JANHMV010000013.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMV010000013.1All displayed genes belong to this local TCS context.
Neighborhood span5 000-7 560 nt2 561 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 000 nt7 560 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX89_RS13050GCF_024498055#NPX89_RS13050
RROmpR
5 000-5 689 nt · Forward (+)
NPX89_RS13055GCF_024498055#NPX89_RS13055
HKClassicCurrent focus
5 686-7 560 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS12715Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0961650
Simplified PFAM architecture for HKOC_0961650
PFAM domain coverage: 225 / 624 aa (36.1%)
1 aa624 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[336-385] | HisKA[405-469] | HATPase_c[514-623]
- Domain count: 3
- Matched identifier: HKOC_0961650
- Positioned domains: HAMP 336-385 ; HisKA 405-469 ; HATPase_c 514-623
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS12715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498055
AssemblyASM2449805v1 · Contighaploid
Genome composition5 938 098 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key