1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:1.53e-39:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX89_RS06890
Response regulator CheV family
Bacillus mycoides · GCF_024498055
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024498055#NPX89_RS06890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:3.98e-18:298:124:111- Raw architecture: CheW:17:1.53e-39:149:134:138#Response_reg:176:3.98e-18:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024498055::NZ_JANHMV010000004.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span193133-194041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX89_06890RefSeq proteinWP_256491134.1
Context group ID
GCF_024498055::NZ_JANHMV010000004.1::G00016Context members
NPX89_RS06890
Partner locus tags
NPX89_RS06890
Partner old locus tags
NPX89_06890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256491134.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX89_RS06890Primary locus identifier stored in the genes table.
Old locus tagNPX89_06890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMV010000004.1Sequence record reported by the local genomic context database.
Genomic interval193 133-194 041 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span193 133-194 041 ntGCF_024498055::NZ_JANHMV010000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498055::NZ_JANHMV010000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMV010000004.1All displayed genes belong to this local TCS context.
Neighborhood span193 133-194 041 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 133 nt194 041 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NPX89_RS06890GCF_024498055#NPX89_RS06890
RRCheVCurrent focus
193 133-194 041 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024498055#NPX89_RS06890The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0569517
Simplified PFAM architecture for RROC_0569517
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0569517
- Positioned domains: CheW 18-149 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_024498055#NPX89_RS06890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498055
AssemblyASM2449805v1 · Contighaploid
Genome composition5 938 098 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key