1 HAMP#1
164-232 aa · 69 aa · 15.2% of protein
Raw token
HAMP:164:0.000000000000385:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX89_RS05095
Histidine kinase, Classic
Bacillus mycoides · GCF_024498055
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498055#NPX89_RS05095Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 453 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-303 aa · 67 aa · 14.8% of protein
Raw token
HisKA:237:6.13e-17:303:67:643 HATPase_c#3
347-453 aa · 107 aa · 23.6% of protein
Raw token
HATPase_c:347:1.41e-28:453:108:109- Raw architecture: HAMP:164:0.000000000000385:232:69:69#HisKA:237:6.13e-17:303:67:64#HATPase_c:347:1.41e-28:453:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498055::NZ_JANHMV010000003.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94360-96407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX89_05095RefSeq proteinWP_002189312.1
Context group ID
GCF_024498055::NZ_JANHMV010000003.1::G00011Context members
NPX89_RS05090NPX89_RS05095
Partner locus tags
NPX89_RS05090NPX89_RS05095
Partner old locus tags
NPX89_05090NPX89_05095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002189312.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A0WRB9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A0WRB9_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX89_RS05095Primary locus identifier stored in the genes table.
Old locus tagNPX89_05095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMV010000003.1Sequence record reported by the local genomic context database.
Genomic interval95 046-96 407 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 360-96 407 ntGCF_024498055::NZ_JANHMV010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498055::NZ_JANHMV010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span94 360-96 407 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 360 nt96 407 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX89_RS05090GCF_024498055#NPX89_RS05090
RROmpR
94 360-95 049 nt · Forward (+)
NPX89_RS05095GCF_024498055#NPX89_RS05095
HKClassicCurrent focus
95 046-96 407 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS05400Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1925619
Simplified PFAM architecture for HKOC_1925619
PFAM domain coverage: 224 / 453 aa (49.4%)
1 aa453 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-231] | HisKA[237-302] | HATPase_c[347-453]
- Domain count: 3
- Matched identifier: HKOC_1925619
- Positioned domains: HAMP 181-231 ; HisKA 237-302 ; HATPase_c 347-453
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS05400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498055
AssemblyASM2449805v1 · Contighaploid
Genome composition5 938 098 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key