1 HisKA_3#1
177-240 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:177:8.9e-23:240:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX89_RS04020
Histidine kinase, Classic
Bacillus mycoides · GCF_024498055
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498055#NPX89_RS04020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 375 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-366 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:281:0.00000000102:366:104:109- Raw architecture: HisKA_3:177:8.9e-23:240:64:68#HATPase_c:281:0.00000000102:366:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498055::NZ_JANHMV010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span152425-154151Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX89_04020RefSeq proteinWP_137077015.1
Context group ID
GCF_024498055::NZ_JANHMV010000002.1::G00005Context members
NPX89_RS04015NPX89_RS04020
Partner locus tags
NPX89_RS04015NPX89_RS04020
Partner old locus tags
NPX89_04015NPX89_04020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_137077015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX89_RS04020Primary locus identifier stored in the genes table.
Old locus tagNPX89_04020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMV010000002.1Sequence record reported by the local genomic context database.
Genomic interval153 024-154 151 nt1 128 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span152 425-154 151 ntGCF_024498055::NZ_JANHMV010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498055::NZ_JANHMV010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span152 425-154 151 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 425 nt154 151 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX89_RS04015GCF_024498055#NPX89_RS04015
RRNarL
152 425-153 027 nt · Reverse (-)
NPX89_RS04020GCF_024498055#NPX89_RS04020
HKClassicCurrent focus
153 024-154 151 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005217685#FC700_RS25510Use this link to inspect the representative gene detail.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2651335
Simplified PFAM architecture for HKOC_2651335
PFAM domain coverage: 294 / 375 aa (78.4%)
1 aa375 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[3-147] | HisKA_3[177-240] | HATPase_c[279-363]
- Domain count: 3
- Matched identifier: HKOC_2651335
- Positioned domains: DesK_N 3-147 ; HisKA_3 177-240 ; HATPase_c 279-363
Cluster members and taxonomy
Representative gene: GCF_005217685#FC700_RS25510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498055
AssemblyASM2449805v1 · Contighaploid
Genome composition5 938 098 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key