1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.000000000000832:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX89_RS03520
Histidine kinase, Classic
Bacillus mycoides · GCF_024498055
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498055#NPX89_RS03520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 476 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-304 aa · 58 aa · 12.2% of protein
Raw token
HisKA:247:0.00000000000421:304:58:643 HATPase_c#3
356-464 aa · 109 aa · 22.9% of protein
Raw token
HATPase_c:356:1.3e-21:464:109:109- Raw architecture: HAMP:167:0.000000000000832:235:69:69#HisKA:247:0.00000000000421:304:58:64#HATPase_c:356:1.3e-21:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498055::NZ_JANHMV010000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52899-55012Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX89_03520RefSeq proteinWP_256491049.1
Context group ID
GCF_024498055::NZ_JANHMV010000002.1::G00003Context members
NPX89_RS03520NPX89_RS03525
Partner locus tags
NPX89_RS03520NPX89_RS03525
Partner old locus tags
NPX89_03520NPX89_03525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256491049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX89_RS03520Primary locus identifier stored in the genes table.
Old locus tagNPX89_03520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMV010000002.1Sequence record reported by the local genomic context database.
Genomic interval52 899-54 329 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 899-55 012 ntGCF_024498055::NZ_JANHMV010000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498055::NZ_JANHMV010000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span52 899-55 012 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 899 nt55 012 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX89_RS03520GCF_024498055#NPX89_RS03520
HKClassicCurrent focus
52 899-54 329 nt · Reverse (-)
NPX89_RS03525GCF_024498055#NPX89_RS03525
RROmpR
54 341-55 012 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024498055#NPX89_RS03520The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1660096
Simplified PFAM architecture for HKOC_1660096
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[248-308] | HATPase_c[358-462]
- Domain count: 3
- Matched identifier: HKOC_1660096
- Positioned domains: HAMP 184-235 ; HisKA 248-308 ; HATPase_c 358-462
Cluster members and taxonomy
Representative gene: GCF_024498055#NPX89_RS03520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498055
AssemblyASM2449805v1 · Contighaploid
Genome composition5 938 098 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key