1 HAMP#1
56-125 aa · 70 aa · 19.6% of protein
Raw token
HAMP:56:0.0000000345:125:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX93_RS29310
Histidine kinase, Classic
Bacillus mycoides · GCF_024498035
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498035#NPX93_RS29310Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 358 aa (63.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-200 aa · 64 aa · 17.9% of protein
Raw token
HisKA:137:0.00000000000000124:200:64:643 HATPase_c#3
250-343 aa · 94 aa · 26.3% of protein
Raw token
HATPase_c:250:1.08e-16:343:94:109- Raw architecture: HAMP:56:0.0000000345:125:70:69#HisKA:137:0.00000000000000124:200:64:64#HATPase_c:250:1.08e-16:343:94:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498035::NZ_JANHMR010000056.1::G00079
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4940-6699Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX93_29325RefSeq proteinWP_033729616.1
Context group ID
GCF_024498035::NZ_JANHMR010000056.1::G00079Context members
NPX93_RS29310NPX93_RS29315
Partner locus tags
NPX93_RS29310NPX93_RS29315
Partner old locus tags
NPX93_29325NPX93_29330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033729616.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6ZDK2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6ZDK2_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX93_RS29310Primary locus identifier stored in the genes table.
Old locus tagNPX93_29325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMR010000056.1Sequence record reported by the local genomic context database.
Genomic interval4 940-6 016 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 940-6 699 ntGCF_024498035::NZ_JANHMR010000056.1::G00079
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498035::NZ_JANHMR010000056.1::G00079Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMR010000056.1All displayed genes belong to this local TCS context.
Neighborhood span4 940-6 699 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 940 nt6 699 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX93_RS29310GCF_024498035#NPX93_RS29310
HKClassicCurrent focus
4 940-6 016 nt · Reverse (-)
NPX93_RS29315GCF_024498035#NPX93_RS29315
RROmpR
6 013-6 699 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26330Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2758860
Simplified PFAM architecture for HKOC_2758860
PFAM domain coverage: 203 / 358 aa (56.7%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-124] | HisKA[137-200] | HATPase_c[250-345]
- Domain count: 3
- Matched identifier: HKOC_2758860
- Positioned domains: HAMP 82-124 ; HisKA 137-200 ; HATPase_c 250-345
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498035
AssemblyASM2449803v1 · Contighaploid
Genome composition5 801 149 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key