1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:2.11e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX93_RS18520
Response regulator OmpR family
Bacillus mycoides · GCF_024498035
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498035#NPX93_RS18520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:2.17e-33:230:77:77- Raw architecture: Response_reg:6:2.11e-40:115:111:111#Trans_reg_C:154:2.17e-33:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498035::NZ_JANHMR010000015.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27295-29080Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX93_18535RefSeq proteinWP_002013637.1
Context group ID
GCF_024498035::NZ_JANHMR010000015.1::G00044Context members
NPX93_RS18520NPX93_RS18525
Partner locus tags
NPX93_RS18520NPX93_RS18525
Partner old locus tags
NPX93_18535NPX93_18540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002013637.1Primary protein accession used for annex mappings.
UniProt accessionJ8I5V2Primary UniProt accession resolved in the annex database.
UniProt IDJ8I5V2_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX93_RS18520Primary locus identifier stored in the genes table.
Old locus tagNPX93_18535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMR010000015.1Sequence record reported by the local genomic context database.
Genomic interval27 295-27 993 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 295-29 080 ntGCF_024498035::NZ_JANHMR010000015.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498035::NZ_JANHMR010000015.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMR010000015.1All displayed genes belong to this local TCS context.
Neighborhood span27 295-29 080 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 295 nt29 080 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX93_RS18520GCF_024498035#NPX93_RS18520
RROmpRCurrent focus
27 295-27 993 nt · Forward (+)
NPX93_RS18525GCF_024498035#NPX93_RS18525
HKClassic
27 986-29 080 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS13370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119295
Simplified PFAM architecture for RROC_1119295
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1119295
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS13370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498035
AssemblyASM2449803v1 · Contighaploid
Genome composition5 801 149 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key