Gene detail

NPX93_RS14835

Histidine kinase, Classic

Bacillus mycoides · GCF_024498035

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_024498035#NPX93_RS14835Stable P2CS identifier used across views.

GenomeGCF_024498035Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_1701352Run 6 · 4 sequences · id 100% · cov 80%

External referencesWP_215561149.1 · MIST4 NPX93_RS14835RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HAMPHisKAHATPase_c

Protein length472 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage246 / 472 aa (52.1%)Merged over positioned domains only.

Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa472 aa

Domain-by-domain annotation3 items

1 HAMP#1

171-241 aa · 71 aa · 15.0% of protein

Raw tokenHAMP:171:0.000000000533:241:71:69

2 HisKA#2

245-310 aa · 66 aa · 14.0% of protein

Raw tokenHisKA:245:7.72e-16:310:66:64

3 HATPase_c#3

362-470 aa · 109 aa · 23.1% of protein

Raw tokenHATPase_c:362:4.69e-27:470:109:109

Raw architecture: HAMP:171:0.000000000533:241:71:69#HisKA:245:7.72e-16:310:66:64#HATPase_c:362:4.69e-27:470:109:109
Domain description: 1 HAMP,1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_024498035::NZ_JANHMR010000010.1::G00031

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span32524-34613Genomic interval covered by the local TCS group.

Identifiers

Old locus tagNPX93_14850RefSeq proteinWP_215561149.1

Context group IDGCF_024498035::NZ_JANHMR010000010.1::G00031

Context members

NPX93_RS14830NPX93_RS14835

Partner locus tags

NPX93_RS14830NPX93_RS14835

Partner old locus tags

NPX93_14845NPX93_14850

Partner protein IDs

WP_002032425.1 WP_215561149.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_215561149.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagNPX93_RS14835Primary locus identifier stored in the genes table.

Old locus tagNPX93_14850Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_JANHMR010000010.1Sequence record reported by the local genomic context database.

Genomic interval33 195-34 613 nt1 419 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span32 524-34 613 ntGCF_024498035::NZ_JANHMR010000010.1::G00031

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_024498035::NZ_JANHMR010000010.1::G00031

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JANHMR010000010.1All displayed genes belong to this local TCS context.

Neighborhood span32 524-34 613 nt2 090 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

32 524 nt34 613 nt

+-NPX93_RS14830 NPX93_RS14835

Neighborhood gene cards

2 genes in the current local neighborhood.

NPX93_RS14830GCF_024498035#NPX93_RS14830

RROmpR

32 524-33 198 nt · Forward (+)

Old locus NPX93_14845RefSeq WP_002032425.1

Open gene

NPX93_RS14835GCF_024498035#NPX93_RS14835

HKClassicCurrent focus

33 195-34 613 nt · Forward (+)

Old locus NPX93_14850RefSeq WP_215561149.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1701352HK

Run 64 sequencesid 100%cov 80%

PFAM ArlS_N + HAMP + HisKA + HATPase_c

Representative GCF_018741565#EXW47_RS13220

Selected clusterHKOC_1701352Run 6 · HK · 4 sequences

Representative sequenceGCF_018741565#EXW47_RS13220Use this link to inspect the representative gene detail.

PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1701352

Simplified PFAM architecture for HKOC_1701352

PFAM domain coverage: 351 / 472 aa (74.4%)

1 aa472 aa

ArlS_NHAMPHisKAHATPase_c

Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-310] | HATPase_c[361-469]
Domain count: 4
Matched identifier: HKOC_1701352
Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-310 ; HATPase_c 361-469

Cluster members and taxonomy

Representative gene: GCF_018741565#EXW47_RS13220

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498035

AssemblyASM2449803v1 · Contighaploid

Genome composition5 801 149 bp · 35,0% GCBacillus mycoides

Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key