1 Response_reg#1
5-115 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:5:1.11e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NPX93_RS05500
Response regulator OmpR family
Bacillus mycoides · GCF_024498035
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024498035#NPX93_RS05500Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:156:4.54e-38:232:77:77- Raw architecture: Response_reg:5:1.11e-37:115:111:111#Trans_reg_C:156:4.54e-38:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024498035::NZ_JANHMR010000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45550-48025Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNPX93_05510RefSeq proteinWP_002129355.1
Context group ID
GCF_024498035::NZ_JANHMR010000003.1::G00010Context members
NPX93_RS05495NPX93_RS05500
Partner locus tags
NPX93_RS05495NPX93_RS05500
Partner old locus tags
NPX93_05505NPX93_05510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002129355.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TN85Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TN85_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNPX93_RS05500Primary locus identifier stored in the genes table.
Old locus tagNPX93_05510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANHMR010000003.1Sequence record reported by the local genomic context database.
Genomic interval47 306-48 025 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 550-48 025 ntGCF_024498035::NZ_JANHMR010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024498035::NZ_JANHMR010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANHMR010000003.1All displayed genes belong to this local TCS context.
Neighborhood span45 550-48 025 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 550 nt48 025 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NPX93_RS05495GCF_024498035#NPX93_RS05495
HKClassic
45 550-47 313 nt · Reverse (-)
NPX93_RS05500GCF_024498035#NPX93_RS05500
RROmpRCurrent focus
47 306-48 025 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS20620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905273
Simplified PFAM architecture for RROC_0905273
PFAM domain coverage: 188 / 239 aa (78.7%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0905273
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS20620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024498035
AssemblyASM2449803v1 · Contighaploid
Genome composition5 801 149 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key