1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:2.4e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS13310
Response regulator OmpR family
Agathobacter rectalis · GCF_024462455
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462455#NE682_RS13310Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-227 aa · 78 aa · 34.1% of protein
Raw token
Trans_reg_C:150:1.13e-26:227:78:77- Raw architecture: Response_reg:4:2.4e-33:113:111:111#Trans_reg_C:150:1.13e-26:227:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462455::NZ_JANGBN010000019.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58779-60397Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_13270RefSeq proteinWP_022293753.1
Context group ID
GCF_024462455::NZ_JANGBN010000019.1::G00018Context members
NE682_RS13305NE682_RS13310
Partner locus tags
NE682_RS13305NE682_RS13310
Partner old locus tags
NE682_13265NE682_13270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022293753.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7E0X5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7E0X5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS13310Primary locus identifier stored in the genes table.
Old locus tagNE682_13270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000019.1Sequence record reported by the local genomic context database.
Genomic interval59 708-60 397 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 779-60 397 ntGCF_024462455::NZ_JANGBN010000019.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000019.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000019.1All displayed genes belong to this local TCS context.
Neighborhood span58 779-60 397 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 779 nt60 397 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE682_RS13305GCF_024462455#NE682_RS13305
HKClassic
58 779-59 705 nt · Reverse (-)
NE682_RS13310GCF_024462455#NE682_RS13310
RROmpRCurrent focus
59 708-60 397 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844305#FGQ75_RS06225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1264141
Simplified PFAM architecture for RROC_1264141
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1264141
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_005844305#FGQ75_RS06225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key