1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.44e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS12880
Response regulator OmpR family
Agathobacter rectalis · GCF_024462455
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462455#NE682_RS12880Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 222 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:148:6.91e-29:221:77:77- Raw architecture: Response_reg:4:1.44e-32:116:113:111#Trans_reg_C:148:6.91e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462455::NZ_JANGBN010000018.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42577-44613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_12840RefSeq proteinWP_022292730.1
Context group ID
GCF_024462455::NZ_JANGBN010000018.1::G00017Context members
NE682_RS12880NE682_RS12885
Partner locus tags
NE682_RS12880NE682_RS12885
Partner old locus tags
NE682_12840NE682_12845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022292730.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2EDG6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2EDG6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS12880Primary locus identifier stored in the genes table.
Old locus tagNE682_12840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000018.1Sequence record reported by the local genomic context database.
Genomic interval42 577-43 245 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 577-44 613 ntGCF_024462455::NZ_JANGBN010000018.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000018.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000018.1All displayed genes belong to this local TCS context.
Neighborhood span42 577-44 613 nt2 037 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 577 nt44 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE682_RS12880GCF_024462455#NE682_RS12880
RROmpRCurrent focus
42 577-43 245 nt · Forward (+)
NE682_RS12885GCF_024462455#NE682_RS12885
HKClassic
43 291-44 613 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS14615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1646102
Simplified PFAM architecture for RROC_1646102
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[149-220]
- Domain count: 2
- Matched identifier: RROC_1646102
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 149-220 ; Trans_reg_C 149-220
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS14615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key