1 Response_reg#1
3-104 aa · 102 aa · 25.3% of protein
Raw token
Response_reg:3:0.000000000325:104:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS09445
Response regulator, unclassified
Agathobacter rectalis · GCF_024462455
ClassRRTypeunclassifiedLength403 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462455#NE682_RS09445Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length403 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 403 aa (25.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa403 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.000000000325:104:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462455::NZ_JANGBN010000012.1::G00008
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span4867-6555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_09425RefSeq proteinWP_306780991.1
Context group ID
GCF_024462455::NZ_JANGBN010000012.1::G00008Context members
NE682_RS09440NE682_RS09445
Partner locus tags
NE682_RS09440NE682_RS09445
Partner old locus tags
NE682_09420NE682_09425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780991.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UF49Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UF49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS09445Primary locus identifier stored in the genes table.
Old locus tagNE682_09425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000012.1Sequence record reported by the local genomic context database.
Genomic interval5 344-6 555 nt1 212 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 867-6 555 ntGCF_024462455::NZ_JANGBN010000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000012.1All displayed genes belong to this local TCS context.
Neighborhood span4 867-6 555 nt1 689 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 867 nt6 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE682_RS09440GCF_024462455#NE682_RS09440
RRCheY
4 867-5 322 nt · Forward (+)
NE682_RS09445GCF_024462455#NE682_RS09445
RRunclassifiedCurrent focus
5 344-6 555 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS10635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + PNP_UDP_12 domains in the representative PFAM annotation.
PFAM architecture for RROC_0383678
Simplified PFAM architecture for RROC_0383678
PFAM domain coverage: 333 / 403 aa (82.6%)
1 aa403 aa
Response_regPNP_UDP_1
- Simplified architecture: Response_reg + PNP_UDP_1
- Raw architecture: Response_reg[3-103] | PNP_UDP_1[151-382]
- Domain count: 2
- Matched identifier: RROC_0383678
- Positioned domains: Response_reg 3-103 ; PNP_UDP_1 151-382
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS10635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key