1 Response_reg#1
37-115 aa · 79 aa · 52.3% of protein
Raw token
Response_reg:37:0.000000626:115:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS09440
Response regulator, CheY family
Agathobacter rectalis · GCF_024462455
ClassRRTypeCheYLength151 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462455#NE682_RS09440Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length151 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage79 / 151 aa (52.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa151 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:37:0.000000626:115:79:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462455::NZ_JANGBN010000012.1::G00008
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span4867-6555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_09420RefSeq proteinWP_306780992.1
Context group ID
GCF_024462455::NZ_JANGBN010000012.1::G00008Context members
NE682_RS09440NE682_RS09445
Partner locus tags
NE682_RS09440NE682_RS09445
Partner old locus tags
NE682_09420NE682_09425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780992.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4ULN6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4ULN6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS09440Primary locus identifier stored in the genes table.
Old locus tagNE682_09420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000012.1Sequence record reported by the local genomic context database.
Genomic interval4 867-5 322 nt456 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 867-6 555 ntGCF_024462455::NZ_JANGBN010000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000012.1All displayed genes belong to this local TCS context.
Neighborhood span4 867-6 555 nt1 689 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 867 nt6 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE682_RS09440GCF_024462455#NE682_RS09440
RRCheYCurrent focus
4 867-5 322 nt · Forward (+)
NE682_RS09445GCF_024462455#NE682_RS09445
RRunclassified
5 344-6 555 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS10640Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2225626
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS10640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key