1 Response_reg#1
5-114 aa · 110 aa · 22.0% of protein
Raw token
Response_reg:5:6.32e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS09375
Response regulator, unclassified
Agathobacter rectalis · GCF_024462455
ClassRRTypeunclassifiedLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462455#NE682_RS09375Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 500 aa (29.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
457-492 aa · 36 aa · 7.2% of protein
Raw token
HTH_AraC:457:0.00000112:492:36:42- Raw architecture: Response_reg:5:6.32e-28:114:110:111#HTH_AraC:457:0.00000112:492:36:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462455::NZ_JANGBN010000011.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123828-127092Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_09355RefSeq proteinWP_015568341.1
Context group ID
GCF_024462455::NZ_JANGBN010000011.1::G00007Context members
NE682_RS09375NE682_RS09380
Partner locus tags
NE682_RS09375NE682_RS09380
Partner old locus tags
NE682_09355NE682_09360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015568341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS09375Primary locus identifier stored in the genes table.
Old locus tagNE682_09355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000011.1Sequence record reported by the local genomic context database.
Genomic interval123 828-125 330 nt1 503 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 828-127 092 ntGCF_024462455::NZ_JANGBN010000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span123 828-127 092 nt3 265 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 828 nt127 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE682_RS09375GCF_024462455#NE682_RS09375
RRunclassifiedCurrent focus
123 828-125 330 nt · Reverse (-)
NE682_RS09380GCF_024462455#NE682_RS09380
HKClassic
125 323-127 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS04605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0158102
Simplified PFAM architecture for RROC_0158102
PFAM domain coverage: 189 / 500 aa (37.8%)
1 aa500 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[416-493]
- Domain count: 2
- Matched identifier: RROC_0158102
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 416-493 ; HTH_18 416-493
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS04605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key