1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:4.74e-35:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS02570
Response regulator OmpR family
Agathobacter rectalis · GCF_024462455
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462455#NE682_RS02570Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.1e-32:223:77:77- Raw architecture: Response_reg:6:4.74e-35:116:112:111#Trans_reg_C:150:2.1e-32:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462455::NZ_JANGBN010000003.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82043-84243Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_02565RefSeq proteinWP_118003971.1
Context group ID
GCF_024462455::NZ_JANGBN010000003.1::G00025Context members
NE682_RS02565NE682_RS02570
Partner locus tags
NE682_RS02565NE682_RS02570
Partner old locus tags
NE682_02560NE682_02565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118003971.1Primary protein accession used for annex mappings.
UniProt accessionA0A414M6S4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414M6S4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS02570Primary locus identifier stored in the genes table.
Old locus tagNE682_02565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000003.1Sequence record reported by the local genomic context database.
Genomic interval83 563-84 243 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 043-84 243 ntGCF_024462455::NZ_JANGBN010000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span82 043-84 243 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 043 nt84 243 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE682_RS02565GCF_024462455#NE682_RS02565
HKClassic
82 043-83 518 nt · Reverse (-)
NE682_RS02570GCF_024462455#NE682_RS02570
RROmpRCurrent focus
83 563-84 243 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460255#DWX07_RS05965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421352
Simplified PFAM architecture for RROC_1421352
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1421352
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_003460255#DWX07_RS05965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key