1 Response_reg#1
5-116 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:5:1.94e-16:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS00945
Response regulator LytTR family
Agathobacter rectalis · GCF_024462455
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024462455#NE682_RS00945Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 241 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
143-230 aa · 88 aa · 36.5% of protein
Raw token
LytTR:143:0.000000000000509:230:94:98- Raw architecture: Response_reg:5:1.94e-16:116:114:111#LytTR:143:0.000000000000509:230:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024462455::NZ_JANGBN010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span199642-200367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_00945RefSeq proteinWP_117481204.1
Context group ID
GCF_024462455::NZ_JANGBN010000001.1::G00005Context members
NE682_RS00945
Partner locus tags
NE682_RS00945
Partner old locus tags
NE682_00945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117481204.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4EHF6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4EHF6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS00945Primary locus identifier stored in the genes table.
Old locus tagNE682_00945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000001.1Sequence record reported by the local genomic context database.
Genomic interval199 642-200 367 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span199 642-200 367 ntGCF_024462455::NZ_JANGBN010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span199 642-200 367 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
199 642 nt200 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE682_RS00945GCF_024462455#NE682_RS00945
RRLytTRCurrent focus
199 642-200 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS01090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867685
Simplified PFAM architecture for RROC_0867685
PFAM domain coverage: 202 / 241 aa (83.8%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-118] | LytTR[143-230]
- Domain count: 2
- Matched identifier: RROC_0867685
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; LytTR 143-230 ; LytTR 143-230
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS01090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key