1 Response_reg#1
8-119 aa · 112 aa · 89.6% of protein
Raw token
Response_reg:8:1.85e-20:119:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS00435
Response regulator, CheY family
Agathobacter rectalis · GCF_024462455
ClassRRTypeCheYLength125 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024462455#NE682_RS00435Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length125 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 125 aa (89.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa125 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:1.85e-20:119:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024462455::NZ_JANGBN010000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span98040-98417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_00435RefSeq proteinWP_306788529.1
Context group ID
GCF_024462455::NZ_JANGBN010000001.1::G00003Context members
NE682_RS00435
Partner locus tags
NE682_RS00435
Partner old locus tags
NE682_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306788529.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS00435Primary locus identifier stored in the genes table.
Old locus tagNE682_00435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000001.1Sequence record reported by the local genomic context database.
Genomic interval98 040-98 417 nt378 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 040-98 417 ntGCF_024462455::NZ_JANGBN010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span98 040-98 417 nt378 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 040 nt98 417 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE682_RS00435GCF_024462455#NE682_RS00435
RRCheYCurrent focus
98 040-98 417 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024462455#NE682_RS00435The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2376700
Simplified PFAM architecture for RROC_2376700
PFAM domain coverage: 111 / 125 aa (88.8%)
1 aa125 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[8-118]
- Domain count: 1
- Matched identifier: RROC_2376700
- Positioned domains: Response_reg 8-118
Cluster members and taxonomy
Representative gene: GCF_024462455#NE682_RS00435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key