1 Response_reg#1
5-107 aa · 103 aa · 43.3% of protein
Raw token
Response_reg:5:4.41e-16:107:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS13810
Response regulator LytTR family
Anaerostipes hadrus · GCF_024462215
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024462215#NE474_RS13810Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 238 aa (69.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-204 aa · 63 aa · 26.5% of protein
Raw token
LytTR:142:0.000000000000223:204:63:98- Raw architecture: Response_reg:5:4.41e-16:107:105:111#LytTR:142:0.000000000000223:204:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024462215::NZ_JANGBA010000045.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21756-22472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_13840RefSeq proteinWP_256158766.1
Context group ID
GCF_024462215::NZ_JANGBA010000045.1::G00024Context members
NE474_RS13810
Partner locus tags
NE474_RS13810
Partner old locus tags
NE474_13840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256158766.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS13810Primary locus identifier stored in the genes table.
Old locus tagNE474_13840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000045.1Sequence record reported by the local genomic context database.
Genomic interval21 756-22 472 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 756-22 472 ntGCF_024462215::NZ_JANGBA010000045.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000045.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000045.1All displayed genes belong to this local TCS context.
Neighborhood span21 756-22 472 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 756 nt22 472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE474_RS13810GCF_024462215#NE474_RS13810
RRLytTRCurrent focus
21 756-22 472 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024462215#NE474_RS13810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0949552
Simplified PFAM architecture for RROC_0949552
PFAM domain coverage: 180 / 238 aa (75.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-208]
- Domain count: 2
- Matched identifier: RROC_0949552
- Positioned domains: Response_reg 4-115 ; LytTR 141-208
Cluster members and taxonomy
Representative gene: GCF_024462215#NE474_RS13810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key