1 Response_reg#1
6-118 aa · 113 aa · 55.7% of protein
Raw token
Response_reg:6:9.65e-33:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS09735
Response regulator NarL family
Anaerostipes hadrus · GCF_024462215
ClassRRTypeNarLLength203 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462215#NE474_RS09735Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length203 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 203 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa203 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
143-196 aa · 54 aa · 26.6% of protein
Raw token
HTH_LUXR:143:0.00000000000492:196:54:58- Raw architecture: Response_reg:6:9.65e-33:118:114:111#HTH_LUXR:143:0.00000000000492:196:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462215::NZ_JANGBA010000024.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22882-25904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_09755RefSeq proteinWP_256158515.1
Context group ID
GCF_024462215::NZ_JANGBA010000024.1::G00014Context members
NE474_RS09735NE474_RS09740
Partner locus tags
NE474_RS09735NE474_RS09740
Partner old locus tags
NE474_09755NE474_09760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256158515.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS09735Primary locus identifier stored in the genes table.
Old locus tagNE474_09755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000024.1Sequence record reported by the local genomic context database.
Genomic interval22 882-23 493 nt612 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 882-25 904 ntGCF_024462215::NZ_JANGBA010000024.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000024.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000024.1All displayed genes belong to this local TCS context.
Neighborhood span22 882-25 904 nt3 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 882 nt25 904 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE474_RS09735GCF_024462215#NE474_RS09735
RRNarLCurrent focus
22 882-23 493 nt · Reverse (-)
NE474_RS09740GCF_024462215#NE474_RS09740
HKUnorthodox
23 490-25 904 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024462215#NE474_RS09735The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2111361
Simplified PFAM architecture for RROC_2111361
PFAM domain coverage: 164 / 203 aa (80.8%)
1 aa203 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[145-196]
- Domain count: 2
- Matched identifier: RROC_2111361
- Positioned domains: Response_reg 6-117 ; GerE 145-196
Cluster members and taxonomy
Representative gene: GCF_024462215#NE474_RS09735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key