1 Response_reg#1
19-128 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:19:7.61e-28:128:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS08250
Response regulator OmpR family
Anaerostipes hadrus · GCF_024462215
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024462215#NE474_RS08250Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 238 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
166-236 aa · 71 aa · 29.8% of protein
Raw token
Trans_reg_C:166:5.17e-21:236:72:77- Raw architecture: Response_reg:19:7.61e-28:128:111:111#Trans_reg_C:166:5.17e-21:236:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024462215::NZ_JANGBA010000019.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2005-2721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_08275RefSeq proteinWP_008393117.1
Context group ID
GCF_024462215::NZ_JANGBA010000019.1::G00007Context members
NE474_RS08250
Partner locus tags
NE474_RS08250
Partner old locus tags
NE474_08275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008393117.1Primary protein accession used for annex mappings.
UniProt accessionD4MXG6Primary UniProt accession resolved in the annex database.
UniProt IDD4MXG6_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS08250Primary locus identifier stored in the genes table.
Old locus tagNE474_08275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000019.1Sequence record reported by the local genomic context database.
Genomic interval2 005-2 721 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 005-2 721 ntGCF_024462215::NZ_JANGBA010000019.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000019.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000019.1All displayed genes belong to this local TCS context.
Neighborhood span2 005-2 721 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 005 nt2 721 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE474_RS08250GCF_024462215#NE474_RS08250
RROmpRCurrent focus
2 005-2 721 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS00985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932872
Simplified PFAM architecture for RROC_0932872
PFAM domain coverage: 182 / 238 aa (76.5%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[19-128] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0932872
- Positioned domains: Response_reg 19-128 ; Response_reg 19-128 ; Trans_reg_C 165-236 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS00985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key