1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.69e-35:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS06850
Response regulator NarL family
Anaerostipes hadrus · GCF_024462215
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462215#NE474_RS06850Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 222 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-210 aa · 53 aa · 23.9% of protein
Raw token
HTH_LUXR:158:1.35e-19:210:53:58- Raw architecture: Response_reg:4:1.69e-35:116:113:111#HTH_LUXR:158:1.35e-19:210:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462215::NZ_JANGBA010000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11486-13473Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_06865RefSeq proteinWP_009203604.1
Context group ID
GCF_024462215::NZ_JANGBA010000014.1::G00005Context members
NE474_RS06850NE474_RS06855
Partner locus tags
NE474_RS06850NE474_RS06855
Partner old locus tags
NE474_06865NE474_06870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009203604.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1IUF1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1IUF1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS06850Primary locus identifier stored in the genes table.
Old locus tagNE474_06865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000014.1Sequence record reported by the local genomic context database.
Genomic interval11 486-12 154 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 486-13 473 ntGCF_024462215::NZ_JANGBA010000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000014.1All displayed genes belong to this local TCS context.
Neighborhood span11 486-13 473 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 486 nt13 473 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE474_RS06850GCF_024462215#NE474_RS06850
RRNarLCurrent focus
11 486-12 154 nt · Reverse (-)
NE474_RS06855GCF_024462215#NE474_RS06855
HKClassic
12 151-13 473 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS13255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637932
Simplified PFAM architecture for RROC_1637932
PFAM domain coverage: 166 / 222 aa (74.8%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1637932
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS13255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key