1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:2.08e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS05175
Response regulator OmpR family
Anaerostipes hadrus · GCF_024462215
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462215#NE474_RS05175Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 219 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.3% of protein
Raw token
Trans_reg_C:143:5.81e-24:215:77:77- Raw architecture: Response_reg:4:2.08e-33:112:111:111#Trans_reg_C:143:5.81e-24:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462215::NZ_JANGBA010000009.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9683-11766Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_05185RefSeq proteinWP_256158314.1
Context group ID
GCF_024462215::NZ_JANGBA010000009.1::G00031Context members
NE474_RS05170NE474_RS05175
Partner locus tags
NE474_RS05170NE474_RS05175
Partner old locus tags
NE474_05180NE474_05185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256158314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS05175Primary locus identifier stored in the genes table.
Old locus tagNE474_05185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000009.1Sequence record reported by the local genomic context database.
Genomic interval11 107-11 766 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 683-11 766 ntGCF_024462215::NZ_JANGBA010000009.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000009.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000009.1All displayed genes belong to this local TCS context.
Neighborhood span9 683-11 766 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 683 nt11 766 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE474_RS05170GCF_024462215#NE474_RS05170
HKClassic
9 683-11 110 nt · Reverse (-)
NE474_RS05175GCF_024462215#NE474_RS05175
RROmpRCurrent focus
11 107-11 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024462215#NE474_RS05175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1789429
Simplified PFAM architecture for RROC_1789429
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[143-215]
- Domain count: 2
- Matched identifier: RROC_1789429
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 143-215
Cluster members and taxonomy
Representative gene: GCF_024462215#NE474_RS05175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key