1 HisKA#1
151-214 aa · 64 aa · 17.0% of protein
Raw token
HisKA:151:0.0000000000112:214:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS00830
Histidine kinase, Classic
Anaerostipes hadrus · GCF_024462215
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024462215#NE474_RS00830Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 377 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-374 aa · 112 aa · 29.7% of protein
Raw token
HATPase_c:263:1.11e-24:374:113:109- Raw architecture: HisKA:151:0.0000000000112:214:64:64#HATPase_c:263:1.11e-24:374:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024462215::NZ_JANGBA010000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2963-4787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_00830RefSeq proteinWP_256158143.1
Context group ID
GCF_024462215::NZ_JANGBA010000002.1::G00008Context members
NE474_RS00830NE474_RS00835
Partner locus tags
NE474_RS00830NE474_RS00835
Partner old locus tags
NE474_00830NE474_00835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256158143.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS00830Primary locus identifier stored in the genes table.
Old locus tagNE474_00830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000002.1Sequence record reported by the local genomic context database.
Genomic interval2 963-4 096 nt1 134 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 963-4 787 ntGCF_024462215::NZ_JANGBA010000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000002.1All displayed genes belong to this local TCS context.
Neighborhood span2 963-4 787 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 963 nt4 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE474_RS00830GCF_024462215#NE474_RS00830
HKClassicCurrent focus
2 963-4 096 nt · Reverse (-)
NE474_RS00835GCF_024462215#NE474_RS00835
RROmpR
4 086-4 787 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024462215#NE474_RS00830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2638025
Simplified PFAM architecture for HKOC_2638025
PFAM domain coverage: 174 / 377 aa (46.2%)
1 aa377 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-214] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2638025
- Positioned domains: HisKA 152-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_024462215#NE474_RS00830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key