1 Response_reg#1
3-109 aa · 107 aa · 45.0% of protein
Raw token
Response_reg:3:0.0000000000000371:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE474_RS00290
Response regulator LytTR family
Anaerostipes hadrus · GCF_024462215
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024462215#NE474_RS00290Stable P2CS identifier used across views.
GenomeGCF_024462215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 238 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:7.82e-19:229:98:98- Raw architecture: Response_reg:3:0.0000000000000371:109:111:111#LytTR:138:7.82e-19:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024462215::NZ_JANGBA010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span68404-69120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE474_00290RefSeq proteinWP_118352297.1
Context group ID
GCF_024462215::NZ_JANGBA010000001.1::G00001Context members
NE474_RS00290
Partner locus tags
NE474_RS00290
Partner old locus tags
NE474_00290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118352297.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE474_RS00290Primary locus identifier stored in the genes table.
Old locus tagNE474_00290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBA010000001.1Sequence record reported by the local genomic context database.
Genomic interval68 404-69 120 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 404-69 120 ntGCF_024462215::NZ_JANGBA010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462215::NZ_JANGBA010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span68 404-69 120 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 404 nt69 120 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE474_RS00290GCF_024462215#NE474_RS00290
RRLytTRCurrent focus
68 404-69 120 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302715#G4929_RS01755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0944412
Simplified PFAM architecture for RROC_0944412
PFAM domain coverage: 203 / 238 aa (85.3%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0944412
- Positioned domains: Response_reg 3-115 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_013302715#G4929_RS01755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024462215
AssemblyASM2446221v1 · Contighaploid
Genome composition3 335 092 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key