1 Response_reg#1
1-82 aa · 82 aa · 90.1% of protein
Raw token
Response_reg:1:7.92e-22:82:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE662_RS09365
Response regulator, CheY family
Bifidobacterium pseudocatenulatum · GCF_024461795
ClassRRTypeCheYLength91 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024461795#NE662_RS09365Stable P2CS identifier used across views.
GenomeGCF_024461795Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length91 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 91 aa (90.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa91 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:7.92e-22:82:83:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024461795::NZ_JANGAH010000053.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE662_09360RefSeq proteinWP_256157427.1
Context group ID
GCF_024461795::NZ_JANGAH010000053.1::G00014Context members
NE662_RS09365
Partner locus tags
NE662_RS09365
Partner old locus tags
NE662_09360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256157427.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE662_RS09365Primary locus identifier stored in the genes table.
Old locus tagNE662_09360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGAH010000053.1Sequence record reported by the local genomic context database.
Genomic interval1-273 nt273 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-273 ntGCF_024461795::NZ_JANGAH010000053.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461795::NZ_JANGAH010000053.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGAH010000053.1All displayed genes belong to this local TCS context.
Neighborhood span1-273 nt273 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt273 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE662_RS09365GCF_024461795#NE662_RS09365
RRCheYCurrent focus
1-273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024461795#NE662_RS09365The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2473851
Simplified PFAM architecture for RROC_2473851
PFAM domain coverage: 81 / 91 aa (89.0%)
1 aa91 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-82]
- Domain count: 1
- Matched identifier: RROC_2473851
- Positioned domains: Response_reg 2-82
Cluster members and taxonomy
Representative gene: GCF_024461795#NE662_RS09365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_024461795
AssemblyASM2446179v1 · Contighaploid
Genome composition2 258 340 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key