1 Response_reg#1
4-71 aa · 68 aa · 94.4% of protein
Raw token
Response_reg:4:0.000000000000558:71:68:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS15625
Response regulator, CheY family
Agathobacter rectalis · GCF_024461635
ClassRRTypeCheYLength72 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024461635#NE621_RS15625Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length72 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage68 / 72 aa (94.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa72 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000558:71:68:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024461635::NZ_JANFZZ010000041.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span815-1033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_15655RefSeq proteinWP_262575290.1
Context group ID
GCF_024461635::NZ_JANFZZ010000041.1::G00040Context members
NE621_RS15625
Partner locus tags
NE621_RS15625
Partner old locus tags
NE621_15655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_262575290.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT2T4R9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT2T4R9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS15625Primary locus identifier stored in the genes table.
Old locus tagNE621_15655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000041.1Sequence record reported by the local genomic context database.
Genomic interval815-1 033 nt219 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span815-1 033 ntGCF_024461635::NZ_JANFZZ010000041.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000041.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000041.1All displayed genes belong to this local TCS context.
Neighborhood span815-1 033 nt219 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
815 nt1 033 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE621_RS15625GCF_024461635#NE621_RS15625
RRCheYCurrent focus
815-1 033 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468745#DW798_RS13785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477781
Simplified PFAM architecture for RROC_2477781
PFAM domain coverage: 67 / 72 aa (93.1%)
1 aa72 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-70]
- Domain count: 1
- Matched identifier: RROC_2477781
- Positioned domains: Response_reg 4-70 ; Response_reg 4-70
Cluster members and taxonomy
Representative gene: GCF_003468745#DW798_RS13785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key