1 Response_reg#1
4-112 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:4:2.2e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS14475
Response regulator OmpR family
Agathobacter rectalis · GCF_024461635
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS14475Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:143:4.61e-27:215:77:77- Raw architecture: Response_reg:4:2.2e-32:112:111:111#Trans_reg_C:143:4.61e-27:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000030.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2349-4603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_14505RefSeq proteinWP_173840710.1
Context group ID
GCF_024461635::NZ_JANFZZ010000030.1::G00033Context members
NE621_RS14470NE621_RS14475
Partner locus tags
NE621_RS14470NE621_RS14475
Partner old locus tags
NE621_14500NE621_14505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173840710.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP2QN82Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP2QN82_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS14475Primary locus identifier stored in the genes table.
Old locus tagNE621_14505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000030.1Sequence record reported by the local genomic context database.
Genomic interval3 950-4 603 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 349-4 603 ntGCF_024461635::NZ_JANFZZ010000030.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000030.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000030.1All displayed genes belong to this local TCS context.
Neighborhood span2 349-4 603 nt2 255 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 349 nt4 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS14470GCF_024461635#NE621_RS14470
HKClassic
2 349-3 896 nt · Reverse (-)
NE621_RS14475GCF_024461635#NE621_RS14475
RROmpRCurrent focus
3 950-4 603 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299645#G4362_RS11510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1858000
Simplified PFAM architecture for RROC_1858000
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[143-215]
- Domain count: 2
- Matched identifier: RROC_1858000
- Positioned domains: Response_reg 4-111 ; Trans_reg_C 143-215
Cluster members and taxonomy
Representative gene: GCF_013299645#G4362_RS11510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key