1 Response_reg#1
5-117 aa · 113 aa · 52.8% of protein
Raw token
Response_reg:5:5.57e-36:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS13655
Response regulator NarL family
Agathobacter rectalis · GCF_024461635
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS13655Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 214 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-205 aa · 57 aa · 26.6% of protein
Raw token
HTH_LUXR:149:6.92e-23:205:57:58- Raw architecture: Response_reg:5:5.57e-36:117:113:111#HTH_LUXR:149:6.92e-23:205:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000025.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19247-20938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_13675RefSeq proteinWP_306781131.1
Context group ID
GCF_024461635::NZ_JANFZZ010000025.1::G00026Context members
NE621_RS13650NE621_RS13655
Partner locus tags
NE621_RS13650NE621_RS13655
Partner old locus tags
NE621_13670NE621_13675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306781131.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UGV3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UGV3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS13655Primary locus identifier stored in the genes table.
Old locus tagNE621_13675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000025.1Sequence record reported by the local genomic context database.
Genomic interval20 294-20 938 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 247-20 938 ntGCF_024461635::NZ_JANFZZ010000025.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000025.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000025.1All displayed genes belong to this local TCS context.
Neighborhood span19 247-20 938 nt1 692 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 247 nt20 938 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS13650GCF_024461635#NE621_RS13650
HKClassic
19 247-20 290 nt · Forward (+)
NE621_RS13655GCF_024461635#NE621_RS13655
RRNarLCurrent focus
20 294-20 938 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS13050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1947655
Simplified PFAM architecture for RROC_1947655
PFAM domain coverage: 168 / 214 aa (78.5%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1947655
- Positioned domains: Response_reg 5-116 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS13050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key