1 Response_reg#1
37-115 aa · 79 aa · 52.3% of protein
Raw token
Response_reg:37:0.000000626:115:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS10100
Response regulator, CheY family
Agathobacter rectalis · GCF_024461635
ClassRRTypeCheYLength151 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS10100Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length151 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage79 / 151 aa (52.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa151 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:37:0.000000626:115:79:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000012.1::G00011
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span84134-85822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_10120RefSeq proteinWP_306780992.1
Context group ID
GCF_024461635::NZ_JANFZZ010000012.1::G00011Context members
NE621_RS10095NE621_RS10100
Partner locus tags
NE621_RS10095NE621_RS10100
Partner old locus tags
NE621_10115NE621_10120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780992.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4ULN6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4ULN6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS10100Primary locus identifier stored in the genes table.
Old locus tagNE621_10120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000012.1Sequence record reported by the local genomic context database.
Genomic interval85 367-85 822 nt456 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 134-85 822 ntGCF_024461635::NZ_JANFZZ010000012.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000012.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span84 134-85 822 nt1 689 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 134 nt85 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS10095GCF_024461635#NE621_RS10095
RRunclassified
84 134-85 345 nt · Reverse (-)
NE621_RS10100GCF_024461635#NE621_RS10100
RRCheYCurrent focus
85 367-85 822 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS10640Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2225626
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS10640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key