1 HAMP#1
183-253 aa · 71 aa · 14.2% of protein
Raw token
HAMP:183:0.00000000000000487:253:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS05500
Histidine kinase, Classic
Agathobacter rectalis · GCF_024461635
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS05500Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 499 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 HisKA#2
268-331 aa · 64 aa · 12.8% of protein
Raw token
HisKA:268:0.0000000000000145:331:64:643 HATPase_c#3
378-491 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:378:3.1e-32:491:114:109- Raw architecture: HAMP:183:0.00000000000000487:253:71:69#HisKA:268:0.0000000000000145:331:64:64#HATPase_c:378:3.1e-32:491:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000005.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62653-64965Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_05515RefSeq proteinWP_055061042.1
Context group ID
GCF_024461635::NZ_JANFZZ010000005.1::G00044Context members
NE621_RS05500NE621_RS05505
Partner locus tags
NE621_RS05500NE621_RS05505
Partner old locus tags
NE621_05515NE621_05520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055061042.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WC02Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WC02_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS05500Primary locus identifier stored in the genes table.
Old locus tagNE621_05515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000005.1Sequence record reported by the local genomic context database.
Genomic interval62 653-64 152 nt1 500 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 653-64 965 ntGCF_024461635::NZ_JANFZZ010000005.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000005.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span62 653-64 965 nt2 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 653 nt64 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS05500GCF_024461635#NE621_RS05500
HKClassicCurrent focus
62 653-64 152 nt · Reverse (-)
NE621_RS05505GCF_024461635#NE621_RS05505
RROmpR
64 276-64 965 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406835#T1815_RS01725Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1481681
Simplified PFAM architecture for HKOC_1481681
PFAM domain coverage: 228 / 499 aa (45.7%)
1 aa499 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[266-330] | HATPase_c[379-488]
- Domain count: 3
- Matched identifier: HKOC_1481681
- Positioned domains: HAMP 200-252 ; HisKA 266-330 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_001406835#T1815_RS01725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key