1 Response_reg#1
5-114 aa · 110 aa · 20.6% of protein
Raw token
Response_reg:5:2.27e-26:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS05440
Response regulator, unclassified
Agathobacter rectalis · GCF_024461635
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS05440Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage172 / 534 aa (32.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-477 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:446:0.000000235:477:32:423 HTH_AraC#3
498-527 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:498:0.0000000249:527:30:42- Raw architecture: Response_reg:5:2.27e-26:114:110:111#HTH_AraC:446:0.000000235:477:32:42#HTH_AraC:498:0.0000000249:527:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000005.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45107-48485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_05455RefSeq proteinWP_118141963.1
Context group ID
GCF_024461635::NZ_JANFZZ010000005.1::G00043Context members
NE621_RS05435NE621_RS05440
Partner locus tags
NE621_RS05435NE621_RS05440
Partner old locus tags
NE621_05450NE621_05455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118141963.1Primary protein accession used for annex mappings.
UniProt accessionA0A413U1L6Primary UniProt accession resolved in the annex database.
UniProt IDA0A413U1L6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS05440Primary locus identifier stored in the genes table.
Old locus tagNE621_05455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000005.1Sequence record reported by the local genomic context database.
Genomic interval46 881-48 485 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 107-48 485 ntGCF_024461635::NZ_JANFZZ010000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span45 107-48 485 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 107 nt48 485 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS05435GCF_024461635#NE621_RS05435
HKClassic
45 107-46 900 nt · Reverse (-)
NE621_RS05440GCF_024461635#NE621_RS05440
RRunclassifiedCurrent focus
46 881-48 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467275#DW912_RS10965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103632
Simplified PFAM architecture for RROC_0103632
PFAM domain coverage: 321 / 534 aa (60.1%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[158-289] | HTH_18[450-527]
- Domain count: 3
- Matched identifier: RROC_0103632
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GGDEF_2 158-289 ; GGDEF_2 158-289 ; HTH_18 450-527 ; HTH_18 450-527
Cluster members and taxonomy
Representative gene: GCF_003467275#DW912_RS10965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key