1 Response_reg#1
6-91 aa · 86 aa · 36.6% of protein
Raw token
Response_reg:6:0.00000000000754:91:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS05340
Response regulator LytTR family
Agathobacter rectalis · GCF_024461635
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024461635#NE621_RS05340Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 235 aa (76.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
135-227 aa · 93 aa · 39.6% of protein
Raw token
LytTR:135:2.42e-16:227:98:98- Raw architecture: Response_reg:6:0.00000000000754:91:89:111#LytTR:135:2.42e-16:227:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024461635::NZ_JANFZZ010000005.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19454-20161Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_05355RefSeq proteinWP_306780650.1
Context group ID
GCF_024461635::NZ_JANFZZ010000005.1::G00042Context members
NE621_RS05340
Partner locus tags
NE621_RS05340
Partner old locus tags
NE621_05355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780650.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UDU8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UDU8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS05340Primary locus identifier stored in the genes table.
Old locus tagNE621_05355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000005.1Sequence record reported by the local genomic context database.
Genomic interval19 454-20 161 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 454-20 161 ntGCF_024461635::NZ_JANFZZ010000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span19 454-20 161 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 454 nt20 161 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE621_RS05340GCF_024461635#NE621_RS05340
RRLytTRCurrent focus
19 454-20 161 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS04540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1031992
Simplified PFAM architecture for RROC_1031992
PFAM domain coverage: 178 / 235 aa (75.7%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-91] | LytTR[136-227]
- Domain count: 2
- Matched identifier: RROC_1031992
- Positioned domains: Response_reg 6-91 ; LytTR 136-227
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS04540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key