1 sCache_like#1
69-130 aa · 62 aa · 14.1% of protein
Raw token
sCache_like:69:0.000000891:130:62:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS04480
Histidine kinase, Classic
Agathobacter rectalis · GCF_024461635
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS04480Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 440 aa (53.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
222-287 aa · 66 aa · 15.0% of protein
Raw token
HisKA:222:4.39e-18:287:66:643 HATPase_c#3
332-440 aa · 109 aa · 24.8% of protein
Raw token
HATPase_c:332:6.32e-32:440:109:109- Raw architecture: sCache_like:69:0.000000891:130:62:114#HisKA:222:4.39e-18:287:66:64#HATPase_c:332:6.32e-32:440:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000004.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32193-34229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_04495RefSeq proteinWP_306780500.1
Context group ID
GCF_024461635::NZ_JANFZZ010000004.1::G00037Context members
NE621_RS04480NE621_RS04485
Partner locus tags
NE621_RS04480NE621_RS04485
Partner old locus tags
NE621_04495NE621_04500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780500.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4U8K7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4U8K7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS04480Primary locus identifier stored in the genes table.
Old locus tagNE621_04495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000004.1Sequence record reported by the local genomic context database.
Genomic interval32 193-33 515 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 193-34 229 ntGCF_024461635::NZ_JANFZZ010000004.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000004.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span32 193-34 229 nt2 037 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 193 nt34 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS04480GCF_024461635#NE621_RS04480
HKClassicCurrent focus
32 193-33 515 nt · Reverse (-)
NE621_RS04485GCF_024461635#NE621_RS04485
RROmpR
33 561-34 229 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS02595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2076909
Simplified PFAM architecture for HKOC_2076909
PFAM domain coverage: 172 / 440 aa (39.1%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-287] | HATPase_c[333-439]
- Domain count: 2
- Matched identifier: HKOC_2076909
- Positioned domains: HisKA 223-287 ; HATPase_c 333-439
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS02595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key