1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.000000000945:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS03490
Histidine kinase, Classic
Agathobacter rectalis · GCF_024461635
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS03490Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 385 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.00000000025:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.3% of protein
Raw token
HATPase_c:272:2.75e-31:380:109:109- Raw architecture: HAMP:89:0.000000000945:159:71:69#HisKA:164:0.00000000025:230:67:64#HATPase_c:272:2.75e-31:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59718-61552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_03495RefSeq proteinWP_306780399.1
Context group ID
GCF_024461635::NZ_JANFZZ010000003.1::G00030Context members
NE621_RS03485NE621_RS03490
Partner locus tags
NE621_RS03485NE621_RS03490
Partner old locus tags
NE621_03490NE621_03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780399.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UA85Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UA85_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS03490Primary locus identifier stored in the genes table.
Old locus tagNE621_03495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval60 395-61 552 nt1 158 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 718-61 552 ntGCF_024461635::NZ_JANFZZ010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span59 718-61 552 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 718 nt61 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS03485GCF_024461635#NE621_RS03485
RROmpR
59 718-60 398 nt · Forward (+)
NE621_RS03490GCF_024461635#NE621_RS03490
HKClassicCurrent focus
60 395-61 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS00850Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2568426
Simplified PFAM architecture for HKOC_2568426
PFAM domain coverage: 174 / 385 aa (45.2%)
1 aa385 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-230] | HATPase_c[275-381]
- Domain count: 2
- Matched identifier: HKOC_2568426
- Positioned domains: HisKA 164-230 ; HATPase_c 275-381
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS00850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key