1 Response_reg#1
35-144 aa · 110 aa · 42.8% of protein
Raw token
Response_reg:35:3.1e-37:144:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS03485
Response regulator OmpR family
Agathobacter rectalis · GCF_024461635
ClassRRTypeOmpRLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS03485Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 257 aa (72.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
176-251 aa · 76 aa · 29.6% of protein
Raw token
Trans_reg_C:176:1.06e-22:251:78:77- Raw architecture: Response_reg:35:3.1e-37:144:110:111#Trans_reg_C:176:1.06e-22:251:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59718-61552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_03490RefSeq proteinWP_022292389.1
Context group ID
GCF_024461635::NZ_JANFZZ010000003.1::G00030Context members
NE621_RS03485NE621_RS03490
Partner locus tags
NE621_RS03485NE621_RS03490
Partner old locus tags
NE621_03490NE621_03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022292389.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S6C3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S6C3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS03485Primary locus identifier stored in the genes table.
Old locus tagNE621_03490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval59 718-60 398 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 718-61 552 ntGCF_024461635::NZ_JANFZZ010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span59 718-61 552 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 718 nt61 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS03485GCF_024461635#NE621_RS03485
RROmpRCurrent focus
59 718-60 398 nt · Forward (+)
NE621_RS03490GCF_024461635#NE621_RS03490
HKClassic
60 395-61 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS04230Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0667678
Simplified PFAM architecture for RROC_0667678
PFAM domain coverage: 185 / 257 aa (72.0%)
1 aa257 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[35-144] | Trans_reg_C[176-250]
- Domain count: 2
- Matched identifier: RROC_0667678
- Positioned domains: Response_reg 35-144 ; Response_reg 35-144 ; Trans_reg_C 176-250 ; Trans_reg_C 176-250
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS04230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key