1 HisKA#1
235-300 aa · 66 aa · 14.4% of protein
Raw token
HisKA:235:0.00000000000000815:300:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS03190
Histidine kinase, Classic
Agathobacter rectalis · GCF_024461635
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS03190Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 457 aa (35.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
346-441 aa · 96 aa · 21.0% of protein
Raw token
HATPase_c:346:0.000000000000226:441:100:109- Raw architecture: HisKA:235:0.00000000000000815:300:66:64#HATPase_c:346:0.000000000000226:441:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span297467-299529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_03195RefSeq proteinWP_306780949.1
Context group ID
GCF_024461635::NZ_JANFZZ010000002.1::G00024Context members
NE621_RS03190NE621_RS03195
Partner locus tags
NE621_RS03190NE621_RS03195
Partner old locus tags
NE621_03195NE621_03200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780949.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UAF6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UAF6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS03190Primary locus identifier stored in the genes table.
Old locus tagNE621_03195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval297 467-298 840 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span297 467-299 529 ntGCF_024461635::NZ_JANFZZ010000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span297 467-299 529 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 467 nt299 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS03190GCF_024461635#NE621_RS03190
HKClassicCurrent focus
297 467-298 840 nt · Reverse (-)
NE621_RS03195GCF_024461635#NE621_RS03195
RROmpR
298 837-299 529 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS10225Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1880888
Simplified PFAM architecture for HKOC_1880888
PFAM domain coverage: 161 / 457 aa (35.2%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-300] | HATPase_c[347-441]
- Domain count: 2
- Matched identifier: HKOC_1880888
- Positioned domains: HisKA 235-300 ; HATPase_c 347-441
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS10225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key