1 HisKA#1
85-153 aa · 69 aa · 22.4% of protein
Raw token
HisKA:85:0.000000000000341:153:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS02165
Histidine kinase, Classic
Agathobacter rectalis · GCF_024461635
ClassHKTypeClassicLength308 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461635#NE621_RS02165Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 308 aa (57.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-307 aa · 108 aa · 35.1% of protein
Raw token
HATPase_c:200:6.4e-20:307:108:109- Raw architecture: HisKA:85:0.000000000000341:153:69:64#HATPase_c:200:6.4e-20:307:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461635::NZ_JANFZZ010000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104542-106160Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_02165RefSeq proteinWP_022293754.1
Context group ID
GCF_024461635::NZ_JANFZZ010000002.1::G00021Context members
NE621_RS02165NE621_RS02170
Partner locus tags
NE621_RS02165NE621_RS02170
Partner old locus tags
NE621_02165NE621_02170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022293754.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP2QKL8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP2QKL8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS02165Primary locus identifier stored in the genes table.
Old locus tagNE621_02165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval104 542-105 468 nt927 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 542-106 160 ntGCF_024461635::NZ_JANFZZ010000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span104 542-106 160 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 542 nt106 160 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE621_RS02165GCF_024461635#NE621_RS02165
HKClassicCurrent focus
104 542-105 468 nt · Reverse (-)
NE621_RS02170GCF_024461635#NE621_RS02170
RROmpR
105 471-106 160 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844305#FGQ75_RS06220Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2880092
Simplified PFAM architecture for HKOC_2880092
PFAM domain coverage: 177 / 308 aa (57.5%)
1 aa308 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-153] | HATPase_c[200-307]
- Domain count: 2
- Matched identifier: HKOC_2880092
- Positioned domains: HisKA 85-153 ; HATPase_c 200-307
Cluster members and taxonomy
Representative gene: GCF_005844305#FGQ75_RS06220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key