1 Response_reg#1
5-112 aa · 108 aa · 46.6% of protein
Raw token
Response_reg:5:2.13e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE621_RS01400
Response regulator OmpR family
Agathobacter rectalis · GCF_024461635
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024461635#NE621_RS01400Stable P2CS identifier used across views.
GenomeGCF_024461635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:153:5.91e-28:230:78:77- Raw architecture: Response_reg:5:2.13e-37:112:110:111#Trans_reg_C:153:5.91e-28:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024461635::NZ_JANFZZ010000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span273016-273714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE621_01405RefSeq proteinWP_015517058.1
Context group ID
GCF_024461635::NZ_JANFZZ010000001.1::G00007Context members
NE621_RS01400
Partner locus tags
NE621_RS01400
Partner old locus tags
NE621_01405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015517058.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4M7Q6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4M7Q6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE621_RS01400Primary locus identifier stored in the genes table.
Old locus tagNE621_01405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval273 016-273 714 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span273 016-273 714 ntGCF_024461635::NZ_JANFZZ010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461635::NZ_JANFZZ010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span273 016-273 714 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
273 016 nt273 714 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE621_RS01400GCF_024461635#NE621_RS01400
RROmpRCurrent focus
273 016-273 714 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209935#EUR_RS11235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120116
Simplified PFAM architecture for RROC_1120116
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[153-230]
- Domain count: 2
- Matched identifier: RROC_1120116
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 153-230 ; Trans_reg_C 153-230
Cluster members and taxonomy
Representative gene: GCF_000209935#EUR_RS11235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024461635
AssemblyASM2446163v1 · Contighaploid
Genome composition3 406 890 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 37 · RR 52CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key