1 Response_reg#1
4-114 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:4:0.000000000000223:114:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE631_RS13675
Response regulator LytTR family
Anaerostipes hadrus · GCF_024460575
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460575#NE631_RS13675Stable P2CS identifier used across views.
GenomeGCF_024460575Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 242 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-226 aa · 85 aa · 35.1% of protein
Raw token
LytTR:142:4.8e-21:226:90:98- Raw architecture: Response_reg:4:0.000000000000223:114:115:111#LytTR:142:4.8e-21:226:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460575::NZ_JANFYQ010000034.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37309-38037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE631_13750RefSeq proteinWP_096241049.1
Context group ID
GCF_024460575::NZ_JANFYQ010000034.1::G00022Context members
NE631_RS13675
Partner locus tags
NE631_RS13675
Partner old locus tags
NE631_13750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096241049.1Primary protein accession used for annex mappings.
UniProt accessionA0A395X5G2Primary UniProt accession resolved in the annex database.
UniProt IDA0A395X5G2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE631_RS13675Primary locus identifier stored in the genes table.
Old locus tagNE631_13750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYQ010000034.1Sequence record reported by the local genomic context database.
Genomic interval37 309-38 037 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 309-38 037 ntGCF_024460575::NZ_JANFYQ010000034.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460575::NZ_JANFYQ010000034.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYQ010000034.1All displayed genes belong to this local TCS context.
Neighborhood span37 309-38 037 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 309 nt38 037 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE631_RS13675GCF_024460575#NE631_RS13675
RRLytTRCurrent focus
37 309-38 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916105#AB5273_RS18565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0802478
Simplified PFAM architecture for RROC_0802478
PFAM domain coverage: 200 / 245 aa (81.6%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-118] | LytTR[145-232]
- Domain count: 2
- Matched identifier: RROC_0802478
- Positioned domains: Response_reg 7-118 ; LytTR 145-232
Cluster members and taxonomy
Representative gene: GCF_040916105#AB5273_RS18565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_024460575
AssemblyASM2446057v1 · Contighaploid
Genome composition3 396 819 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 58 · HK 28 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key